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September 2005 Archive

Baker Center Seminar Friday, September 30 (9/29/05 kmw)
Andrzej Kolinski, of the Laboratory of Theory of Biopolymers, Faculty of Chemistry, Warsaw University, Poland, will present Protein modeling in reduced conformational space at 4 pm Friday, September 30, in 1414 Molecular Biology. This is part of the Laurence H. Baker Center for Bioinformatics and Biological Statistics seminar series. All are invited.

Birth Announcement (9/28/05 kmw)
Eris Tracie Peto was born on Tuesday, August 9, to Myron Peto (BCB, MGET, Jernigan/Dobbs) and wife Tracie Heidt. Congtatulations on the arrival of your beautiful new daughter, Myron!

September 30 BCB Faculty Seminar (9/28/05 kmw)
Gordon Gremme, a Brendel lab collaborator from the Center for Bioinformatics University of Hamburg, Germany, will present this week's BCB Faculty seminar, titled Computational gene prediction: methods and applications. The seminar will be held Friday, September 30, at 12:10 pm in E164 Lagomarcino. The ISU computational biology community is invited to attend.

Familiar Face in Today's Des Moines Register (9/19/05 kmw)
Be sure to check the front page of today's Des Moines Register, where you'll see Des Moines Marathon runner Myron Peto (BCB, MGET, Jernigan/Dobbs) taking great strides in yesterday's race. Race results show that Myron finished 22nd overall in a field of about 2,700. Congratulations, Myron, for your great performance on a hot, hot day!

Xun Gu to Present This Week's BCB Faculty Seminar (9/14/05 kmw)
Xun Gu (BCB, GDCB), will present Evolutionary genomics: from gene to genome at the BCB Faculty Seminar on Friday, Septemer 16. The seminar will begin at 12:10 pm in E164 Lagomarcino and is open to the public.

ISU Awarded IGERT Renewal (9-02-05 kmw)
ISU has been awarded a $3 million five-year renewal of the NSF-IGERT computational molecular biology training grant for the period 2005-2010. Dan Voytas (BCB, GDCB) will continue as PI on the project, with Vasant Honavar (BCB, Com Sci) and Drena Dobbs (BCB, GDCB) serving as co-PIs.

The focus of the new grant will be to lead the field of computational biology into the next era of discovery and to educate a diverse group of professionals to spearhead this effort. To enhance minority education, the project will partner ISU with New Mexico State University, Las Cruces, which has an emerging BCB graduate program. Desh Ranjan and Mary O'Connell of NMSU will serve as co-PIs on the grant.

During the initial IGERT funding period, ISU established the interdepartmental graduate program in bioinformatics and computational biology (BCB), and provided fellowships for 30 graduate students majoring in BCB, biophysics, chemical engineering, computer sciences, electrical engineering and genetics. It also funded computational biology hardware, software and support. Details

ISU Researchers Receive $2 Million to Study Plant Disease Defenses (9-02-05 kmw)
An ISU team led by Roger Wise (BCB, Plant Path) has been awarded a four-year $2 million grant to study disease defenses in agricultural crops. "Plant diseases are among the greatest deterrents to crop production worldwide," Wise said. "Major efforts have been devoted to understanding the mechanisms of genetic resistance and incorporating them into breeding programs to offset yield loss caused by pathogens."

ISU co-PIs are Steve Whitham (Plant Path), Julie Dickerson (BCB, ECpE) and Dan Nettleton (BCB, Stat). Patrick Schweizer, Institute of Plant Genetics and Crop Plant Research, in Gatersleben, Germany, will serve as an international collaborator. Details

BCB Faculty Seminar Series (9-06-05 ts)
The next BCB Faculty Seminar will take place on September 9 at 12:10 p.m in E164 Lagomarcino. Oliver Eulenstein from the Computer Science Department will present a seminar entitled, "Assembling the Tree of Life". His abstract and upcoming seminars as they become available can be viewed on the BCB 691 website.

NSF Offers International Summer Institutes for US Grad Students (9-02-05 kmw)
NSF is offering a great opportunity for US grad students to participate in East Asia and Pacific summer institutes next July-August. Check this out...experience the world...expand your horizons!

The East Asia and Pacific Summer Institutes (EAPSI) provide U.S. graduate students in science and engineering first-hand research experience in Australia, China, Japan, Korea, or Taiwan, an introduction to the science and science policy infrastructure of the respective location, and orientation to the culture and language. The primary goals of EAPSI are to introduce students to East Asia and Pacific science and engineering in the context of a research laboratory, and to initiate personal relationships that will better enable them to collaborate with foreign counterparts in the future. The institutes last approximately eight weeks from June to August and are administered in the United States by the National Science Foundation (NSF). The National Institutes of Health (NIH) co-sponsor the Summer Institute in Japan.

See the NSF website for details. Don't let this opportunity pass you by!

BCB Faculty News (9-07-05 ts)
Xiaoqiu Huang, BCB faculty member in the Computer Science department, recently completed work along side researchers at Washington University in St. Louis on a project to map chimpanzee DNA. The project's findings were published September 1 in the journal Nature. Huang’s role in the project was to develop and modify the software that allowed the data to be organized and read by 100 computers to simultaneously assemble the draft. More details can be found here. This same software was recently used to map the chicken genome.

The new Center for Computational Intelligence, Learning, and Discovery was established at ISU on July 1. Directed by computer science professor, and BCB faculty member, Vasant Honavar, the Center will study how massive data sets can be integrated, analyzed and interpreted to advance collaborative science and research. The Center will also offer students and professors the opportunity to integrate data across the fields of life sciences into physical sciences and engineering. More details can be found here.

Jackie Shanks, recently featured in the January 2005 issue of the AlChE Journal, has spent years studying how to make periwinkle plants better produce indole alkaloids for use in the chemotherapy drugs Oncovin and Velbe. Shanks, working with other scientists from institutions across the country, is studying a complex reaction pathway of more than 30 steps that leads to periwinkle plants. It is the hope that work on the pathway will lead to increased production of the needed drug, thereby lowering drug prices. More details can be found here. Jackie joined the BCB Faculty last Spring.

Surya Mallapragada, associate professor in the Department of Chemical and Biological Engineering at ISU, BCB Faculty member and associate scientist at the U.S. Department of Energy's Ames Laboratory, has been named to the Defense Science Study Group (DSSG) of the Institute for Defense Analyses. Mallapragada will be taking part in the two-year program focused on defense policy, related research and development, and the systems, missions, and operations of the U.S. armed forces. Appointment will begin in 2006 and continue through 2007. More details can be found here.

Conferences of Interest (9-06-05 ts)
Remember to check out conference listings on the BCB Website which have been recently updated.

First Thursday (8-31-05 kmw)
This month we're getting back in the groove, and holding our First Thursday supper and social on the first Thursday! Please let Trish know whether you will be able to attend. We will meet in 1102 Molecular Biology Building, 5 to 6:30 p.m. All BCB, IGERT and MGET students are invited. Hope to see you there!

Great Opportunity for TA Training (8-31-05 kmw)
We've received the following notice from the Center for Excellence in Learning and Teaching (CELT):

The Center for Excellence in Learning and Teaching is planning a series of workshops this fall especially for graduate students.

The first workshop, "TA Workshop: Hints from the Handbook," will be held Thursday, September 8, from 3:30-5:00 p.m. in Room 244-246 of the Memorial Union. CELT staffers Karen Bovenmyer and Susan Yager will provide an overview of material in the newly-revised TA Handbook.

Copies of the handbook will be available for TAs who do not yet have one. Refreshments will be provided.

Future CELT events designed especially for graduate students are:

Grad Student Focus: Classroom Management
Wednesday, September 14, 3:30-5 p.m.
Gold Room, Memorial Union

Grad Student Focus: Grading
Wednesday, October 12, 5-6:30 p.m.
Gold Room, Memorial Union

Grad Student Focus: Classroom Discussion
Wednesday, November 2, 3:30-5 p.m.
South Ballroom, Memorial Union.

To register for any of these events, TAs should contact CELT at celt@iastate.edu or 4-5357.

September Birthdays (8/31/05; edited 1-4-07 kmw)
It's time to salute our September birthday celebrants:

    Matthew Beard, BCB and MGET
    Zhong Gao, BCB alumnus
    Michael Lawrence, BCB and MGET
    Brooke Peterson-Burch, IGERT alumnus
    Misha Rajaram, BCB
    Aimin Yan, BCB
    Huaijun Zhou, BCB alumnus
Happy birthday to each of you!

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