Past ISU Bioinformatics Seminars
| Date |
Speaker |
Presentation Title |
| January 21, 2002 | Dr. Haiyan Huang | Statistical Methods for Identifying Transcription Factor Binding Sites |
| December 10, 2002 | Dr. Paul Vitanyi | The Similarity Metric |
| November 18, 2002 | Dr. Volker Brendel | Integration of Database and Computational Tools to Address Questions in Plant Molecular Biology from a Genome Perspective |
| November 15, 2002 | Dr. Roger Wise | Parallel Expression Analysis using Barley Microarrays |
| November 8, 2002 | Dr. Les Miller | Issues in Integrating Biology Databases |
| November 4, 2002 | Dr. Jeremy F. Taylor | Proteomics and the Analysis of Protein Expression Profiles |
| November 1, 2002 | Dr. Amy Andreotti | New modes of protein-protein recognition |
| October 25, 2002 | Dr. Mei Hong | Structure and dynamics of membrane peptides and proteins by solid-state NMR |
| October 18, 2002 | Dr. Dianne Cook | Visualization of microarrays using tours and projection pursuit |
| October 11, 2002 | Dr. Xun Gu | Evolutionary Genomics: From Gene to Genome |
| September 26, 2002 | Dr. Frank Doyle | Systems Biology: New Opportunities for Process Systems Engineering |
| September 24, 2002 | Dr. Mike Sanderson | Exploiting large sequence databases to build the phylogenetic tree of life: problems, strategies and algorithms |
| September 13, 2002 | Dr. John Mayfield | Do notions of computational complexity lead to new understanding of evolution? |
| September 6, 2002 | Dr. Daniel Ashlock | A Simple System for Modeling Competitive Exclusion |
| September 5, 2002 | Dr. Xiaoqiu Huang | Mouse Whole-Genome Assembly |
| May 23, 2002 | Prof. Steffen Petersen | Biophysical and Bioinformatics Studies of Proteins |
| May 3, 2002 | Wieslawa Mentzen | Evolution of Acetyl-CoA Carboxylase |
| April 29, 2002 | Ron Elber | Counting Sequences That Fit |
| April 26, 2002 | Pete Vedell | Ancestral Amino Acid Inference |
| April 26, 2002 | Stacey Turner | Creation of a barley microarray for the study of stress pathways in Triticeae |
| April 25, 2002 | M. F. Thorpe | The Energy Landscape of Molecules, Glasses and Proteins |
| April 23, 2002 | Eve Wurtele | An informal presentation on the Highlights of First Int. Metabolomics Congress |
| April 19, 2002 | Di Wu | Structure Determination - An updated algorithm for solving the molecular distance geometric problem with sparse distances |
| April 19, 2002 | Hua Zhou | A Sequential Analysis Problem in Protein Structure Prediction |
| April 12, 2002 | Jo Etzel | Psychophysiology and Bioinformatics: an Introduction |
| April 12, 2002 | Yingchun Wang | Proteomic study of thylakoid membrane proteins of Synechocystis sp. PCC6803 |
| April 10, 2002 | Prof. David Galbraith | Exploring the nucleus for high-throughput characterization of gene expression |
| March 29, 2002 | Ling Guo | Greedy Closure Evolutionary Algorithms |
| March 29, 2002 | Huaijun Zhou | Genetic control of immune response in livestock |
| March 15, 2002 | Changhui Yan | Protein function classification using both sequence and structural features |
| March 15, 2002 | Shiquan Wu | Multiple genome rearrangement |
| March 8, 2002 | Zhong Gao | Genome-wide Search for Novel Tumor Necrosis Factor (TNF)Proteins in Human and Arabidopsis genomes |
| March 8, 2002 | Fang Fang | Test of a Bayesian recombination detection method |
| March 1, 2002 | Jiangying Gu | Functional Divergence in TGF-signaling pathway |
| March 1, 2002 | Feng Zhang | Comparative Study of Maize P1 Gene and its Homologs |
| February 22, 2002 | Haining Lin | Gap Closure Using Repetitive Reads |
| February 22, 2002 | Liang Ye | Comparison of Assembled Contigs with Consensus Sequence |
| February 15, 2002 | Xueyuan Cao | "Functional analysis of maize CRINKLY4-like receptor kinase genes in Arabidopsis" |
| February 15, 2002 | Justin Schonfeld | "Investigating Evolutionary Lines of Least Resistance Using The Inverse Protein-Folding Problem" |
| February 14, 2002 | Dimitris Margaritis | "Probabilistic Model Structure from Data" |
| February 8, 2002 | Shannon Schlueter | "Discovery Driven Design and the Bioinformatics Dogma" |
| February 8, 2002 | Tammy Benson | "Use of the Expected Log Likelihood to Evaluate Designs for Mapping Quantitative Trait Loci" |
| January 28,2002 | Dr. Susan Gibson | Using Genomics and Genetics to Characterize the Effects of Sugar Levels on Plant Metabolism and Development |
| January 25, 2002 | Kent Vander Velden, M.S. Candidate | Spatial Clustering of Differences in Measured Homoplasy with Respect to Protein Structure |
| December 11, 2001 | Dan Nettleton/Rhonda Cooke | "Harvesting microarray data with a statistical scythe" |
| December 7, 2001 | Dr. Julie Dickerson | "Metabolic Network Models Using Fuzzy Cognitive Maps |
| December 4,2001 | Di Cook | "Visualizing global gene expression data into the 21st century and beyond" |
| November 28, 2001 | Yuan Lin BCB MS Candidate | "The Relationship of Sequence Similarity and Expression Pattern Similarity between Yeast Genes within Gene Families" |
| November 27, 2001 | Chandrika Mulakala | "Understanding Protein Structure-Function Relationships in Family 47 alpha-1,2-mannosidases through computational docking of ligands." |
| November 27, 2001 | Jackie Shanks | "Metabolite profiling and flux maps - the Metabolic Engineer needs both!" |
| November 27, 2001 | Dr. Toni Kazic | "Understanding the Architecture of Cellular Biochemistry" |
| November 20, 2001 | Huirong Qian | "latest CHIPS" |
| November 13, 2001 | Carol Foster | "later CHIPS" |
| November 8, 2001 | Steve Thompson | "Bioinformatics: A SeqLab Introduction" |
| November 6, 2001 | Jo Etzel | "Marigolds: A Genetic Algorithm Simulation" |
| November 5, 2001 | INFORMAX representative | "VECTOR SUITE NTI (bioinformatics software) demonstration" |
| October 29, 2001 | Dr. Susan Carpenter | "Computational Models of Virus Evolution" |
| October 22, 2001 | Dr. Edward Pollak | "Basic Concepts in Coalescent Theory" |
| October 19, 2001 | Dr. Xiaoqiu Huang | "DNA sequence assembly and comparison" |
| October 8, 2001 | Dr. Xiaowu Gai | "Bioinformatics Resources at ISU" |
| October 5, 2001 | Dr. Dan Voytas | "Diversity and Genomic Organization of Retrotransposons in Arabidopsis" |
| September 28, 2001 | Dr. Xun Gu | "Comparative genomics: from sequence evolution to function" |
| September 28, 2001 | Dr. Karin Dorman | "Drug Resistance, Rare Genes, and Vaccination Strategies: The Power of a Good Mathematical Model" |
| September 14, 2001 | Dr. Howard Levine | "Mathematical Modeling Of Capillary Formation And Development In Tumor Angiogenesis" |
| May 4, 2001 | Dr. Keith Yamamoto | "Combinatorial Control: Implications for Structure and Mechanisms of Transcriptional Regulatory Complexes" |
| June 15, 2001 | Dr. Ritsert C. Jansen | "Genetical genomics: the added value from segregation" |
| April 30, 2001 | Dr. Gunnar von Heijne | "Membrane proteins - from statistics to experiment to prediction" |
| April 27, 2001 | Dr. Volker Brendel | "Future Directions Presentation" |
| April 26, 2001 | Dr. Volker Brendel | "Gene Prediction and Pre-mRNA Splicing: Application of Statistical and Computational Methods to Inform Fundamental Problems in Genomics and Molecular Biology" |
| April 26, 2001 | Dr. Peter Dervan | "Beyond the Genome: Chemistry for the 21st Century" |
| April 24, 2001 | Dr. Vivak Kapur | "Pasteurella multocida: A Lean Mean Killing Machine" |
| April 19, 2001 | Dr. Art Delcher | "The Assembly of the Human Genome" |
| April 17, 2001 | Dr. Timothy J. Griffin, Ph.D. | "Strategies for Proteome Analysis Using Mass Spectrometry" |
| April 12, 2001 | Dr. Howard Stern | "Future Directions Presentation" |
| April 12, 2001 | Dr. Alberto Maria Segre | "HOPS: A Distributed Hybrid Optimization Technique for Protein Structure Prediction" |
| April 11, 2001 | Dr. Howard Stern | "Inference for Extreme Disease Incidence Rates" |
| April 10, 2001 | Dr. Rob Edwards | "Comparative genomics of Salmonella spp.: Lessons from full and partial sequencing" |
| April 6, 2001 | Dr. Naomi Altman | "Future Directions Presentation" |
| April 6, 2001 | Jianmin Feng | "Clustering ZmDB by eMotifs" |
| April 6, 2001 | Yan Fu | "High-throughput gene discovery in maize: beyond EST" |
| April 5, 2001 | Dr. Naomi Altman | "Self-Modeling Regression for Longitudinal Data" |
| April 4, 2001 | Dr. Robert Jernigan | "Future Directions Presentation" |
| April 3, 2001 | Dr. Robert Jernigan | "Large-Scale Motions of Coarse-Grained Proteins" |
| March 26, 2001 | Dr. Jeff Boore | "The Comparative Genomics Program at the Joint Genome Institute" |
| March 26, 2001 | Dr. Maria Samsonova | "How to construct the integrated atlas of gene expression in situ" |
| March 9, 2001 | Hailong Zhang | "A pilot work of chloroplast proteomics project" |
| March 9, 2001 | Yuan Lin | "Relationship between sequence similarity and gene expression profile similarity among yeast genes within gene families" |
| March 7, 2001 | Nicole Leahy | "Initial Behavior of the Pseudophytic Evolutionary Algorithm" |
| March 5, 2001 | Dr. Srinivas Kambhampati | "Evolution and Biogeography of the Woodroach, Cryptocercus" |
| February 27, 2001 | Dr. Lila Vodkin | "Development of microarray resources and global expression profiles in soybean" |
| February 23, 2001 | Dr. David Stanford | Baker Center Associate Scientist Candidate: Drop-In Hour |
| February 23, 2001 | Carson Andorf | "Variability in Contact Regions among Amino Acid Sites in the Quaternary Structure of Protein Chains: An Information-Theoretic Analysis" |
| February 23, 2001 | Yanming Wang | "Alternative Splicing of the Drosophila melanogaster lola locus" |
| February 23, 2001 | Dr. Debashish Bhattacharya | "Endosymbiosis Explains Algal Origins" |
| February 22, 2001 | Dr. David Stanford | Baker Center Associate Scientist Candidate: Informal Talk |
| February 20, 2001 | Dr. Xiaowu Gai | Baker Center Associate Scientist Candidate: Informal Talk |
| February 20, 2001 | Dr. Cecilia Clementi | "Understanding the folding mechanism of proteins: theory meets experiments" |
| February 16, 2001 | Alain Laederach | "Polysaccharide Recognition by Surfactant Protein D: Novel Interactions of a C-Type Lectin with Non terminal Glucosyl Residues" |
| February 16, 2001 | Cizhong Jiang | "Molecular and Computational Analysis of Myb Genes" |
| February 14, 2001 | Dr. John Mayfield | "Time and Complexity" |
| February 13, 2001 | Dr. Steven Bradbury | "Structure-Activity Relationships for Industrial Chemicals: Integrating Computational Chemistry and Mechanistic Toxicology Research" |
| February 13, 2001 | Dr. Susan Carpenter | "Genetic and Computational Analysis of Virus Evolution" |
| February 5, 2001 | Dr. Steven Plotkin | "Understanding Protein Folding with Energy Landscape Theory" |
| January 30, 2001 | Dr. Alexei Tkachenko | "DNA and its Interactions" |
| January 25, 2001 | Dr. Ricky Kendall & colleagues | "High Performance Computing: building and running of inexpensive clusters capable of supercomputing performance" |
| November 17, 2000 | Dr. Eve Wurtele | "Weaving a metabolic web" |
| November 10, 2000 | Dr. Vasant Honavar | "Algorithmic Approaches to Data-Driven Knowledge Discovery in Bioinformatics" |
| November 10, 2000 | Dr. Steven Willson | "Using genetic algorithms to help align DNA strings" |
| October 30, 2000 | Dr. Howard A Levine | "A model for angiogenesis in tumor growth" |
| October 27, 2000 | Dr. Dan Voytas and graduate students Wei Zhu and Tom Vigdal | "Internship Opportunities for Graduate Students in Bioinformatics" |
| October 26, 2000 | Dr. Etsuko Moriyama | "Gleaning information from genomic data: from protein function to codon usage" |
| October 26, 2000 | Dr. Massimo Negrotti | "Sciences and Cultures of the Artificial: Methodological Constraints on Reproducing Nature" |
| October 23, 2000 | Dr. Guilherme Rosa | "MCMC Bayesian Methods to Study Quantitative Trait Loci using Genetic Markers" |
| October 20, 2000 | Dr. Kai-Ming Ho | "Protein Structure Prediction" |
| October 20, 2000 | Dr. Jack Dekker | "Toward the Mathematics of Weedy Foxtail (Setaria spp.) Seed Behavior" |
| October 19, 2000 | Dr. Igor Rogozin | "Mutational spectra and natural selection" |
| October 13, 2000 | Dr. Julie Dickerson | "Fuzzy Logic Applications in Biology" |
| October 9, 2000 | Dr. Hui-Hsien Chou | "Finding the most meaningful ways to look at biological data in order to improve computational biology powers" |
| October 9, 2000 | Dr. Mike Sanderson | "New methods for reconstructing deep evolutionary time" |
| October 6, 2000 | Dr. Srinivas Aluru | "Computing Sequence Alignments in Parallel" |
| October 2, 2000 | Dr. James Reecy | "Expression profiling of skeletal muscle growth and development" |
| October 2, 2000 | Dr. Thomas L. Casavant | "Informatics for Large-Scale Gene Discovery and Full-Length cDNA Sequencing" |
| September 29, 2000 | Dr. Hal Stern | "Bayesian methods in animal breeding selection experiments" |
| September 26, 2000 | Dr. Steve Whitham | "Changes in Host Gene Expression Profiles During Virus Infection" |
| September 25, 2000 | Dr. J. Gregor Sutcliffe | "Using TOGA Gene Expression Profiling to Investigate Neuropsychiatric Disorders" |
| September 25, 2000 | Dr. Randy Shoemaker | "Soybean Genomics: ESTs and Genome Sampling" |
| September 25, 2000 | Dr. Richa Agarwala | "The puzzle of assembling the human genome sequence." |
| September 23, 2000 | Symposium | "Symposium on the Mechanisms of Cellular Regulation. A symposium in honor of Dr Donald J. Graves" |
| September 22, 2000 | Dr. Oliver Eulenstein | "Predicting Gene Duplications" |
| September 22, 2000 | Dr. Gavin Naylor | "Alife for exploring the origin of life." |
| September 21, 2000 | Dr. Jim Dunwell | "Structure and Function of Germin -- A unique stress related protein in plants." |
| September 15, 2000 | Dr. W. Allen Miller | "The Plant Virus RNA World" |
| September 15, 2000 | Dr. Volker Brendel | "Computational Approaches to Gene Identification in Genomic Sequences by Integrated Evaluation of Genomic cDNA, and Protein Sequence Properties" |
| September 11, 2000 | Dr. Rohan Fernando | "Controlling the relative frequency of false positives (RFFP) in a multiple test situation." |
| September 8, 2000 | Dr. Dan Ashlock | "Rectophytes, a computational investigation of abstract biological phenomena." |
| September 8, 2000 | Charles J. Link Jr., M.D. | "Gene Therapy for Cancer using the Sodium Iodide Symporter Gene" |
| August 29, 2000 | Dr. Ernest S. Kawasaki | "Microarrays - A Highly Versatile Technology for the Post Genomics Revolution" |
| August 29, 2000 | Lynn Connery | "Demonstration: Reading Microarrays Using GSI Lumonics Scanner" |
